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Poaceae intronless genes database

WebOct 13, 2016 · Intronless genes have gained increasing attention because of their implication in understanding evolutionary patterns of related genes and genomes . … WebOct 1, 2014 · Five Poaceae species, Sorghum bicolor, Zea mays, Setaria italica, Panicum virgatum and Brachypodium distachyon, are included in the current release of PIGD. Gene annotations and sequence data were collected and integrated from different databases. The primary focus of this study was to provide gene descriptions and gene product records.

PIGD: a database for intronless genes in the Poaceae

WebFeb 16, 2024 · Intronless genes (IGs), which are a feature of prokaryotes, are a fascinating group of genes that are also present in eukaryotes. In the current study, a comparison of … WebFeb 16, 2024 · Intronless genes (IGs), which are a feature of prokaryotes, are a fascinating group of genes that are also present in eukaryotes. In the current study, a comparison of Poaceae genomes revealed that the origin of IGs may have involved ancient intronic splicing, reverse transcription, and retrotranspositions. bugle simple chrome fur https://rixtravel.com

DATABASE Open Access PIGD: a database for …

WebNov 15, 2011 · This database, called IGD (Intronless Gene Database), is a collection of gene sequences that were annotated and curated. The current version of IGD contains 687 human intronless genes with their protein and CDS sequences. Some features of the entries are given in this paper. Data was extracted from GenBank release 183 using a Perl script. This database, with a user-friendly web interface, provides access to a collection of intronless genes from five genome sequenced Poaceae, including Sorghum bicolor, Zea mays, Setaria italica, Panicum virgatum and Brachypodium distachyon. PIGD will allow researchers to easily identify intronless genes, integrate … See more The user is introduced to the objective of the PIGD, the major scientific contributions, and the species that are currently included in the database. Details about the organization that developed the PIGD and contact … See more BLAST search (release version 2.2.9) can be conducted from http://pigd.ahau.edu.cn/BLAST.phpto search PIGD using … See more There are two different ways to search the database: quick and advanced searches. Users can either type a truncated version or the entire ID for a gene, transcript and protein and PIGD identifier into the search field found on the top … See more From the home page, users can click on “Browse” to select their desired species from the drop-down menu or by clicking directly on the image of the species seen in the middle of the home page. A page providing general … See more WebApr 12, 2024 · The green foxtail, Setaria viridis (L.) P. Beauv. (Poales: Poaceae), is a troublesome and widespread grass weed in China. The acetolactate synthase (ALS)-inhibiting herbicide nicosulfuron has been intensively used to manage S. viridis, and this has substantially increased the selection pressure. Here we confirmed a 35.8-fold resistance … cross country freight las vegas

Poaceae - an overview ScienceDirect Topics

Category:PIECE 2.0: an update for the plant gene structure …

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Poaceae intronless genes database

IGD: A resource for intronless genes in the human genome

WebAug 7, 2024 · This database, with a user-friendly web interface, covers a collection of intronless genes from six genome-sequenced Rosaceae species. The RIGD integrates … WebOct 1, 2014 · Five Poaceae species, Sorghum bicolor, Zea mays, Setaria italica, Panicum virgatum and Brachypodium distachyon, are included in the current release of PIGD. Gene …

Poaceae intronless genes database

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WebJul 23, 2010 · Our analyses revealed a number of intronless genes that reside in 6 deuterostomes (sea urchin, sea squirt, zebrafish, chicken, platypus, and human). We also determined the conservation for each intronless gene in archaea, bacteria, fungi, plants, metazoans, and other eukaryotes. WebMar 11, 2024 · Poaceae, formerly called Gramineae, grass family of monocotyledonous flowering plants, a division of the order Poales. The Poaceae are the world’s single most …

WebBackground: Intronless genes are a feature of prokaryotes; however, they are widespread and unequally distributed among eukaryotes and represent an important resource to … WebMar 23, 2024 · Poaceae-specific β-1,3; ... By searching the METLIN database, we identified 16 of the 46 features, including one known metabolite (β-d-glucan), ... Among these genes, OsCslF6 transcript levels were significantly lower in the oslox2 and oscoi1 mutants compared to NIP (Figure S5b).

WebJan 13, 2024 · Intronless genes regulatory role. Abstract ... Mouse IG and MEG datasets obtained as described before from the Ensembl database according to their exon count were classified into two groups: 1) 20,694 protein-coding genes with more or equal to two exons were labeled as MEGs, 2) 1,116 protein-coding genes with only one exon count and one ... WebTo build a centralized platform, we developed IGDD—a comprehensive and integrated database for intronless genes that covers five dicots, including Arabi- dopsis thaliana (Arabidopsis), Carica papaya (papaya), Populus trichocarpa (poplar), Salix suchowensis (willow) and Vitis vinifera (grape).

WebAbstract. Brachypodium distachyon Oryza sativa, Sorghum bicolor Zea mays, are included in the current version of POGD. The database provides gene descriptions (chromosome strands, physical location), gene product records (protein length, isoelectric point, molecular weight as well as gene and protein sequences) and functional annotations ...

WebMay 3, 2024 · All the protein–protein interaction domains were predicted based on HMMR3 search against the Pfam 32 database (E-value cutoff = 1). ... Intronless genes were identified based on the number of introns of each locus counted from GFF3 files. ... Unequal expansion of 11 UPS gene families in Brassicaceae and Poaceae. Single asterisks … cross country freight phone number near meWebList of Poaceae genera. Culm of Bromus sterilis, showing typical grass morphology with blade-like leaves and inflorescence as spikelets organised in a panicle. The true grasses ( … cross country freight fargoWeb8 rows · Jun 30, 2015 · In this study, we present the Poaceae Intronless Genes Database (PIGD), a user-friendly web ... cross country freight linesWebThe genera in the family of Poaceae (Table 1) include a wide range of grasses, such as bamboo, barley, cane, fescue, lawn grass, oats, pappus, and rice. Table 1. Genera in the … cross country freight kansas cityWebE.A. Kellogg, in Brenner's Encyclopedia of Genetics (Second Edition), 2013 Abstract. The grass family (Gramineae or Poaceae) is economically and ecologically the most important … cross country freight rules tariffWebOct 26, 2006 · Here the real-time amplification profiles of three intron-bearing genes (VEFG,VEGFB and VEGFC) was compared to that of three non intron-bearing genes (XCR1, SSTR4 and MC1R) after challenge with increasing concentrations of contaminating genomic DNA (0.5–500 pg/μl). cross country freight reviewsWebApr 11, 2024 · Previous studies have shown that intronless genes first evolved in early land plant evolution and indicated the correlation between intron-loss and development, metabolism, and housekeeping functions. cross country freight near me