Arabidopsis dap-seq
WebDAP can effectively solve the limitation of ChIP technology which lacks the specific antibody of target protein, and has a wider range of application. Figure 1. DAP-seq protocol overview (Bartlett, A.; et al. 2024) In the past epigenetic research, the discovery of regulatory sites of transcription factors has always been a difficult problem.
Arabidopsis dap-seq
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Web25 mag 2016 · Overall, DAP-Seq offers a low-cost high-throughput approach to identify TFBS in native sequence context for any organism complete with all DNA chemical … Web19 mag 2016 · Using DAP-seq, we defined the Arabidopsis cistrome by resolving motifs and peaks for 529 TFs. Because genomic DNA used in DAP-seq retains 5 …
Web25 mag 2016 · Using DAP-seq, we defined the Arabidopsis cistrome by resolving motifs and peaks for 529 TFs. Because genomic DNA used in DAP-seq retains 5-methylcytosines, we determined that >75% (248/327) of Arabidopsis TFs surveyed were methylation sensitive, a property that strongly impacts the epicistrome landscape. Web25 set 2024 · Using sequential DNA affinity purification sequencing (seq-DAP-seq), we determined genome-wide binding of SEP3 homomeric and SEP3-AG heteromeric …
Web18 gen 2024 · A Comprehensive Atlas of Arabidopsis Regulatory DNA [DAP-seq] Organisms: Arabidopsis thaliana; Zea mays: Experiment type: Other: Summary : … Web30 ott 2024 · We therefore performed DAP-seq experiments using maize ARFs incubated with Arabidopsis genomic DNA and found that all were enriched for TGTCGG or TGTC …
WebArabidopsis: [noun] a small genus of annual or biennial herbs (family Brassicaceae) of north temperate regions with basal rosettes of petioled leaves, cauline leaves short …
Web24 lug 2024 · We also transferred the trained model to arabidopsis DAP-seq datasets with accuracy reaching over 0.8, which largely exceeds the performance of existing prediction methods. The new DL-based method provides a reliable and powerful approach to predict TF binding sites based on in vivo TFBSs datasets in maize and results can be … marktschorgast firmenWeb7 gen 2024 · RNA-seq analysis revealed coordinated downregulation of several metabolic pathways including energy metabolism and translation, and upregulation of numerous … marktrust electric inductionWeb14 set 2024 · DNA affinity purification sequencing (DAP-seq) has also demonstrated that TGTCGG is a probable hexanucleotide-target motif of ARF2 and ARF5 . The activity of this newly identified motif as functional … mark truth hairWeb10 apr 2024 · Background Glycosylphosphatidylinositol (GPI) and GPI-anchored proteins (GAPs) are important for cell wall formation and reproductive development in Arabidopsis. However, monocot counterparts that function in kernel endosperm development have yet to be discovered. Here, we performed a multi-omic analysis to explore the function of GPI … mark try not to laugh 16http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T004142_2.00 mark truthWebArabidopsis Interactions Viewer 2.0. ... Li et al. (2014), and Brady et al. (2011) and were mostly generated by DAP-seq, with some generated by Y1H. All subcellular localisation data is from SUBA, the Arabidopsis Subcellular Database (Hooper et al., 2024). Additional protein function data is from MapMan ... nayel zeaiter grand palaisWeb1 lug 2024 · Genome-wide IDD4 DNA-binding studies (DAP-SEQ) combined with DEG analysis of idd4SRDX lines identified IDD4-regulated functional gene clusters that contribute to plant growth and development. In summary, we discovered that the expression of idd4SRDX activates a wide range of defense-related traits opening up the possibility to … mark t sheehan high school class of 1974